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  • Change log
  • Acknowledgments
  • Introduction
  • Concepts
  • Basic workflow
  • Basic usage examples
  • Specification
  • Toolbox
  • Customization
  • Hirni commands
  • Python module reference
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  • DataLad extension module for neuroimaging studies
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DataLad extension module for neuroimaging studies¶

_images/poster.png
  • Change log
  • Acknowledgments

Overview¶

  • Introduction
    • What is datalad-hirni?
    • Is it free and open source?
    • Where do I get it?
    • What now?
  • Concepts
    • One thing to bind them all
    • Trust automation
    • Conversion
    • Don’t trust automation
  • Basic workflow
    • Build your study dataset
    • Import DICOM files
    • Add arbitrary data
    • Convert your dataset
  • Basic usage examples
    • An example study
    • Example queries
    • Demo script to bootstrap a DICOM database from scan tarballs
    • Demo: Conversion to BIDS
    • Demo: A Reproducible GLM Analysis

Details¶

  • Specification
    • Overview
    • Structure
  • Toolbox
  • Customization
    • Configuration
    • Procedures
    • Rules

Command manuals¶

  • Hirni commands
    • datalad-hirni-import-dcm
    • datalad-hirni-dicom2spec
    • datalad-hirni-spec2bids
    • datalad-hirni-spec4anything

Python API¶

  • Python module reference

Indices and tables¶

  • Index
  • Module Index
  • Search Page
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