DataLad extension module for neuroimaging studies

• Change log
• Acknowledgments

Overview

• Introduction
  • What is datalad-hirni?
  • Is it free and open source?
  • Where do I get it?
  • What now?
• Concepts
  • One thing to bind them all
  • Trust automation
  • Conversion
  • Don’t trust automation
• Basic workflow
  • Build your study dataset
  • Import DICOM files
  • Add arbitrary data
  • Convert your dataset
• Basic usage examples
  • An example study
  • Example queries
  • Demo script to bootstrap a DICOM database from scan tarballs
  • Demo: Conversion to BIDS
  • Demo: A Reproducible GLM Analysis

Details

• Specification
  • Overview
  • Structure
• Toolbox
• Customization
  • Configuration
  • Procedures
  • Rules

Command manuals

• Hirni commands
  • datalad-hirni-import-dcm
  • datalad-hirni-dicom2spec
  • datalad-hirni-spec2bids
  • datalad-hirni-spec4anything

Python API

• Python module reference

Indices and tables

• Index
• Module Index
• Search Page